IL_9QQQ_123
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GAGAAC*GAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_123 not in the Motif Atlas
- Homologous match to IL_7A0S_059
- Geometric discrepancy: 0.0749
- The information below is about IL_7A0S_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.5
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9QQQ|1|a|G|1651
9QQQ|1|a|A|1652
9QQQ|1|a|G|1653
9QQQ|1|a|A|1654
9QQQ|1|a|A|1655
9QQQ|1|a|C|1656
*
9QQQ|1|a|G|2004
9QQQ|1|a|A|2005
9QQQ|1|a|C|2006
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain m
- Large ribosomal subunit protein bL17
Coloring options: