IL_9QQQ_129

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9QQQ|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_129 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0442

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9QQQ|1|a|U|1712
9QQQ|1|a|A|1713
9QQQ|1|a|U|1714
9QQQ|1|a|G|1715
9QQQ|1|a|U|1716
9QQQ|1|a|A|1717
9QQQ|1|a|G|1718
*
9QQQ|1|a|U|1742
9QQQ|1|a|G|1743
9QQQ|1|a|A|1744
9QQQ|1|a|A|1745
9QQQ|1|a|A|1746

Current chains

Chain a

E. coli 23S rRNA

Nearby chains