IL_9QQQ_153

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9QQQ|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_153 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.183

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9QQQ|1|a|A|2459
9QQQ|1|a|U|2460
9QQQ|1|a|A|2461
*
9QQQ|1|a|U|2489
9QQQ|1|a|G|2490
9QQQ|1|a|U|2491
9QQQ|1|a|U|2492
9QQQ|1|a|U|2493

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27