IL_9QQQ_160
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 9QQQ|1|a|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_160 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.1153
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9QQQ|1|a|C|2636
9QQQ|1|a|U|2637
9QQQ|1|a|G|2638
9QQQ|1|a|A|2639
9QQQ|1|a|G|2640
*
9QQQ|1|a|C|2774
9QQQ|1|a|G|2775
9QQQ|1|a|A|2776
9QQQ|1|a|G|2777
9QQQ|1|a|A|2778
9QQQ|1|a|U|2779
9QQQ|1|a|G|2780
9QQQ|1|a|A|2781
9QQQ|1|a|G|2782
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
Coloring options: