IL_9QSA_099

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9QSA|1|A2|A|3319, 9QSA|1|A2|U|3335, 9QSA|1|A2|C|3339

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|C|3316
9QSA|1|A2|G|3317
9QSA|1|A2|A|3318
9QSA|1|A2|A|3319
9QSA|1|A2|G|3320
9QSA|1|A2|G|3321
*
9QSA|1|A2|U|3333
9QSA|1|A2|G|3334
9QSA|1|A2|U|3335
9QSA|1|A2|U|3336
9QSA|1|A2|G|3337
9QSA|1|A2|A|3338
9QSA|1|A2|C|3339
9QSA|1|A2|G|3340

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain j2

Large ribosomal subunit protein eL43

Chain m2

Small subunit ribosomal RNA; SSU rRNA