IL_9QSA_111

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAGGC*GCUC

Length

11 nucleotides

Bulged bases

9QSA|1|A2|G|3734, 9QSA|1|A2|G|3736, 9QSA|1|A2|G|3737, 9QSA|1|A2|C|3814, 9QSA|1|A2|U|3815

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|G|3732
9QSA|1|A2|U|3733
9QSA|1|A2|G|3734
9QSA|1|A2|A|3735
9QSA|1|A2|G|3736
9QSA|1|A2|G|3737
9QSA|1|A2|C|3738
*
9QSA|1|A2|G|3813
9QSA|1|A2|C|3814
9QSA|1|A2|U|3815
9QSA|1|A2|C|3816

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein eL8

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain D2

Large ribosomal subunit protein uL2

Chain R2

Large ribosomal subunit protein uL23