IL_9QSA_143

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

9QSA|1|A2|C|4409, 9QSA|1|A2|C|4410, 9QSA|1|A2|A|4416, 9QSA|1|A2|G|4515, 9QSA|1|A2|C|4516, 9QSA|1|A2|G|4518, 9QSA|1|A2|A|4521

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|C|4408
9QSA|1|A2|C|4409
9QSA|1|A2|C|4410
9QSA|1|A2|C|4411
9QSA|1|A2|G|4412
9QSA|1|A2|G|4413
9QSA|1|A2|A|4414
9QSA|1|A2|U|4415
9QSA|1|A2|A|4416
9QSA|1|A2|G|4417
*
9QSA|1|A2|U|4514
9QSA|1|A2|G|4515
9QSA|1|A2|C|4516
9QSA|1|A2|G|4517
9QSA|1|A2|G|4518
9QSA|1|A2|A|4519
9QSA|1|A2|G|4520
9QSA|1|A2|A|4521
9QSA|1|A2|G|4522

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

Large ribosomal subunit protein uL6

Chain G1

Large ribosomal subunit protein eL14

Chain H2

Large ribosomal subunit protein eL6

Chain I2

Large ribosomal subunit protein uL13

Chain M2

Large ribosomal subunit protein eL20