IL_9QSJ_020
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CAG*CAGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QSJ_020 not in the Motif Atlas
- Geometric match to IL_8B0X_020
- Geometric discrepancy: 0.0776
- The information below is about IL_8B0X_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02111.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9QSJ|1|A|C|440
9QSJ|1|A|A|441
9QSJ|1|A|G|442
*
9QSJ|1|A|C|492
9QSJ|1|A|A|493
9QSJ|1|A|G|494
9QSJ|1|A|A|495
9QSJ|1|A|A|496
9QSJ|1|A|G|497
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
Coloring options: