IL_9QSJ_040

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9QSJ|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_040 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.1617

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9QSJ|1|A|G|933
9QSJ|1|A|C|934
9QSJ|1|A|A|935
*
9QSJ|1|A|U|1380
9QSJ|1|A|U|1381
9QSJ|1|A|C|1382
9QSJ|1|A|C|1383
9QSJ|1|A|C|1384

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9

Chain Z

Transfer RNA; tRNA