IL_9QSJ_046

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9QSJ|1|A|C|1200, 9QSJ|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_046 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.1871

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9QSJ|1|A|G|1057
9QSJ|1|A|G|1058
*
9QSJ|1|A|U|1199
9QSJ|1|A|C|1200
9QSJ|1|A|A|1201
9QSJ|1|A|U|1202
9QSJ|1|A|C|1203

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14