IL_9QSJ_051
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QSJ_051 not in the Motif Atlas
- Geometric match to IL_8B0X_052
- Geometric discrepancy: 0.0613
- The information below is about IL_8B0X_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32376.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9QSJ|1|A|C|1158
9QSJ|1|A|U|1159
9QSJ|1|A|G|1160
9QSJ|1|A|C|1161
*
9QSJ|1|A|G|1175
9QSJ|1|A|A|1176
9QSJ|1|A|G|1177
9QSJ|1|A|G|1178
9QSJ|1|A|A|1179
9QSJ|1|A|A|1180
9QSJ|1|A|G|1181
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain I
- Small ribosomal subunit protein uS9
Coloring options: