IL_9QSJ_058

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_058 not in the Motif Atlas

Geometric match to IL_8B0X_177

Geometric discrepancy: 0.0443

The information below is about IL_8B0X_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9QSJ|1|A|G|1405
9QSJ|1|A|U|1406
9QSJ|1|A|5MC|1407
*
9QSJ|1|A|G|1494
9QSJ|1|A|U|1495
9QSJ|1|A|C|1496

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain X

ermBL mRNA transcript

Chain Y

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA