IL_9QSJ_061
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GGAG*UGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QSJ_061 not in the Motif Atlas
- Homologous match to IL_6CZR_169
- Geometric discrepancy: 0.1386
- The information below is about IL_6CZR_169
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.14
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 36
Unit IDs
9QSJ|1|A|G|1416
9QSJ|1|A|G|1417
9QSJ|1|A|A|1418
9QSJ|1|A|G|1419
*
9QSJ|1|A|U|1481
9QSJ|1|A|G|1482
9QSJ|1|A|A|1483
9QSJ|1|A|C|1484
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: