IL_9QSJ_071

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_071 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0567

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9QSJ|1|a|C|239
9QSJ|1|a|C|240
9QSJ|1|a|A|241
9QSJ|1|a|G|242
9QSJ|1|a|U|243
9QSJ|1|a|A|244
9QSJ|1|a|G|245
*
9QSJ|1|a|C|253
9QSJ|1|a|G|254
9QSJ|1|a|A|255
9QSJ|1|a|A|256
9QSJ|1|a|C|257
9QSJ|1|a|G|258

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain k

Large ribosomal subunit protein uL15