IL_9QSJ_107
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QSJ_107 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.131
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9QSJ|1|a|A|1262
9QSJ|1|a|U|1263
9QSJ|1|a|A|1264
9QSJ|1|a|A|1265
9QSJ|1|a|G|1266
9QSJ|1|a|U|1267
9QSJ|1|a|A|1268
9QSJ|1|a|A|1269
*
9QSJ|1|a|U|2011
9QSJ|1|a|G|2012
9QSJ|1|a|A|2013
9QSJ|1|a|A|2014
9QSJ|1|a|A|2015
9QSJ|1|a|U|2016
9QSJ|1|a|U|2017
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: