IL_9QSJ_119

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_119 not in the Motif Atlas

Geometric match to IL_8B0X_120

Geometric discrepancy: 0.1186

The information below is about IL_8B0X_120

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52564.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9QSJ|1|a|U|1481
9QSJ|1|a|G|1482
*
9QSJ|1|a|C|1507
9QSJ|1|a|A|1508
9QSJ|1|a|A|1509
9QSJ|1|a|G|1510

Current chains

Chain a

E. coli 23S rRNA

Nearby chains