IL_9QSJ_128

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9QSJ|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_128 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0512

The information below is about IL_8B0X_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9QSJ|1|a|U|1712
9QSJ|1|a|A|1713
9QSJ|1|a|U|1714
9QSJ|1|a|G|1715
9QSJ|1|a|U|1716
9QSJ|1|a|A|1717
9QSJ|1|a|G|1718
*
9QSJ|1|a|U|1742
9QSJ|1|a|G|1743
9QSJ|1|a|A|1744
9QSJ|1|a|A|1745
9QSJ|1|a|A|1746

Current chains

Chain a

E. coli 23S rRNA

Nearby chains