IL_9QSJ_140

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9QSJ|1|a|C|2055, 9QSJ|1|a|U|2613, 9QSJ|1|a|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_140 not in the Motif Atlas

Geometric match to IL_8B0X_140

Geometric discrepancy: 0.0675

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

9QSJ|1|a|A|2054
9QSJ|1|a|C|2055
9QSJ|1|a|G|2056
*
9QSJ|1|a|C|2612
9QSJ|1|a|U|2613
9QSJ|1|a|A|2614
9QSJ|1|a|U|2615

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32