IL_9QSJ_144

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_144 not in the Motif Atlas

Homologous match to IL_7A0S_078

Geometric discrepancy: 0.3867

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9QSJ|1|a|U|2085
9QSJ|1|a|U|2086
9QSJ|1|a|G|2087
*
9QSJ|1|a|C|2232
9QSJ|1|a|U|2233
9QSJ|1|a|G|2234

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain w

Large ribosomal subunit protein bL28