IL_9QSJ_164
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 9QSJ|1|a|A|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QSJ_164 not in the Motif Atlas
- Homologous match to IL_7A0S_098
- Geometric discrepancy: 0.1438
- The information below is about IL_7A0S_098
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9QSJ|1|a|G|2737
9QSJ|1|a|A|2738
9QSJ|1|a|U|2739
9QSJ|1|a|A|2740
9QSJ|1|a|A|2741
9QSJ|1|a|G|2742
*
9QSJ|1|a|C|2762
9QSJ|1|a|G|2763
9QSJ|1|a|A|2764
9QSJ|1|a|A|2765
9QSJ|1|a|A|2766
9QSJ|1|a|C|2767
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain g
- Large ribosomal subunit protein uL6
- Chain i
- Large ribosomal subunit protein uL13
Coloring options: