IL_9QSJ_170
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QSJ_170 not in the Motif Atlas
- Geometric match to IL_8B0X_172
- Geometric discrepancy: 0.0803
- The information below is about IL_8B0X_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.5
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9QSJ|1|b|G|23
9QSJ|1|b|G|24
9QSJ|1|b|U|25
9QSJ|1|b|C|26
9QSJ|1|b|C|27
9QSJ|1|b|C|28
*
9QSJ|1|b|G|56
9QSJ|1|b|A|57
9QSJ|1|b|A|58
9QSJ|1|b|A|59
9QSJ|1|b|C|60
Current chains
- Chain b
- E. coli 5S rRNA
Nearby chains
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
Coloring options: