IL_9R3A_008

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R3A_008 not in the Motif Atlas

Homologous match to IL_6CZR_120

Geometric discrepancy: 0.22

The information below is about IL_6CZR_120

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

9R3A|1|A|C|116
9R3A|1|A|U|117
9R3A|1|A|G|118
9R3A|1|A|C|119
9R3A|1|A|C|120
*
9R3A|1|A|G|201
9R3A|1|A|A|202
9R3A|1|A|U|203
9R3A|1|A|G|204

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20