Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9R3A_0011/A/12:22No text annotation
homologous
HL_6CZR_072
NA
HL_9R3A_0021/A/142:147GNRA
homologous
HL_6CZR_074
NA
HL_9R3A_0031/A/170:175GNRA
geometric
HL_5FJC_002
HL_34789.4
HL_9R3A_0041/A/233:241GNRA related
homologous
HL_6CZR_077
NA
HL_9R3A_0051/A/270:275GNRA
homologous
HL_6CZR_078
NA
HL_9R3A_0061/A/294:307No text annotation
homologous
HL_6CZR_079
NA
HL_9R3A_0071/A/316:321UNCG
homologous
HL_6CZR_080
NA
HL_9R3A_0081/A/353:358GNRA
homologous
HL_6CZR_081
NA
HL_9R3A_0091/A/393:398No text annotation
homologous
HL_6CZR_082
NA
HL_9R3A_0101/A/436:444GNRA wlth extra near cWW
geometric
HL_8CRE_217
HL_98423.3
HL_9R3A_0111/A/496:501GNRA variation
homologous
HL_6CZR_216
NA
HL_9R3A_0121/A/591:597No text annotation
homologous
HL_6CZR_085
NA
HL_9R3A_0131/A/663:672No text annotation
homologous
HL_6CZR_086
NA
HL_9R3A_0141/A/700:705GNRA
homologous
HL_6CZR_087
NA
HL_9R3A_0151/A/760:770No text annotation
homologous
HL_6CZR_088
NA
HL_9R3A_0161/A/814:820No text annotation
HL_9R3A_0171/A/836:841GNRA
homologous
HL_6CZR_090
NA
HL_9R3A_0181/A/871:876GNRA
homologous
HL_6CZR_091
NA
HL_9R3A_0191/A/937:946No text annotation
homologous
HL_6CZR_092
NA
HL_9R3A_0201/A/985:992No text annotation
homologous
HL_6CZR_217
NA
HL_9R3A_0221/A/1050:1055GNRA
homologous
HL_6CZR_095
NA
HL_9R3A_0231/A/1063:1070T-loop related
homologous
HL_6CZR_096
NA
HL_9R3A_0241/A/1108:1114No text annotation
homologous
HL_6CZR_097
NA
HL_9R3A_0251/A/1138:1146GNRA with extra cWW
geometric
HL_7A0S_056
HL_87268.2
HL_9R3A_0261/A/1239:1244No text annotation
HL_9R3A_0271/A/1288:1297T-loop with 3 stacked bulged bases
homologous
HL_6CZR_100
NA
HL_9R3A_0281/A/1330:1340No text annotation
homologous
HL_6CZR_101
NA
HL_9R3A_0291/A/1423:1428No text annotation
HL_9R3A_0301/Y/13:23No text annotation
homologous
HL_7YSE_001
NA
HL_9R3A_0311/Y/32:40tRNA anticodon loop
homologous
HL_3TUP_002
HL_81376.3
HL_9R3A_0321/Y/54:62T-loop with 2 stacked bulged bases
homologous
HL_5WT1_003
HL_33597.3
HL_9R3A_0331/Z/13:22No text annotation
homologous
HL_7YSE_001
NA
HL_9R3A_0341/Z/31:39tRNA anticodon loop
homologous
HL_9MTS_102
HL_81376.3
HL_9R3A_0351/Z/53:61T-loop with 2 stacked bulged bases
homologous
HL_5WT1_003
HL_33597.3
HL_9R3A_0361/a/59:68No text annotation
geometric
HL_8B0X_033
HL_35677.5
HL_9R3A_0371/a/86:96No text annotation
HL_9R3A_0381/a/123:128No text annotation
homologous
HL_7A0S_003
HL_82710.3
HL_9R3A_0391/a/137:142UNCG
geometric
HL_7KKV_002
HL_61337.4
HL_9R3A_0401/a/158:168No text annotation
geometric
HL_8B0X_037
NA
HL_9R3A_0411/a/194:201No text annotation
homologous
HL_7A0S_006
HL_48677.1
HL_9R3A_0421/a/225:230No text annotation
geometric
HL_8B0X_039
HL_63151.1
HL_9R3A_0431/a/246:252No text annotation
homologous
HL_7A0S_008
HL_76371.2
HL_9R3A_0441/a/305:312T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_13999.3
HL_9R3A_0451/a/319:323No text annotation
geometric
HL_8B0X_042
HL_75660.8
HL_9R3A_0461/a/327:335T-loop with unstacked turn
homologous
HL_7A0S_012
HL_27670.4
HL_9R3A_0471/a/382:392No text annotation
homologous
HL_7A0S_013
HL_91503.8
HL_9R3A_0481/a/410:417Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.5
HL_9R3A_0491/a/462:467GNRA
homologous
HL_7A0S_015
HL_34789.4
HL_9R3A_0501/a/487:493GNRA
homologous
HL_7A0S_016
HL_34789.4
HL_9R3A_0511/a/544:549No text annotation
HL_9R3A_0521/a/566:575T-loop with 2 stacked bulged bases
homologous
HL_7A0S_018
HL_33597.3
HL_9R3A_0531/a/611:617No text annotation
geometric
HL_8B0X_049
HL_34789.4
HL_9R3A_0541/a/629:634GNRA
homologous
HL_7A0S_020
HL_34789.4
HL_9R3A_0551/a/641:647No text annotation
geometric
HL_8B0X_051
HL_07380.1
HL_9R3A_0561/a/712:719GNRA with extra cWW
geometric
HL_7A0S_056
HL_87268.2
HL_9R3A_0571/a/744:753No text annotation
homologous
HL_7A0S_022
HL_50204.1
HL_9R3A_0581/a/779:785UNCG variation
homologous
HL_7A0S_023
HL_51020.2
HL_9R3A_0591/a/826:831No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_9R3A_0601/a/885:891No text annotation
geometric
HL_8B0X_056
HL_67772.1
HL_9R3A_0611/a/955:962GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_9R3A_0621/a/978:985No text annotation
homologous
HL_7A0S_027
HL_47171.1
HL_9R3A_0631/a/1222:1227GNRA
homologous
HL_7A0S_031
HL_34789.4
HL_9R3A_0641/a/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_33597.3
HL_9R3A_0651/a/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_49081.1
HL_9R3A_0661/a/1363:1368GNRA variation
homologous
HL_7A0S_034
HL_34789.4
HL_9R3A_0671/a/1389:1398No text annotation
homologous
HL_7A0S_035
HL_77449.1
HL_9R3A_0681/a/1451:1459No text annotation
geometric
HL_8B0X_064
HL_00557.1
HL_9R3A_0691/a/1492:1498No text annotation
homologous
HL_7A0S_037
HL_39243.1
HL_9R3A_0711/a/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_90436.3
HL_9R3A_0721/a/1612:1619No text annotation
homologous
HL_7A0S_040
HL_28592.2
HL_9R3A_0731/a/1630:1636No text annotation
geometric
HL_8B0X_069
HL_34789.4
HL_9R3A_0741/a/1691:1696UNCG
homologous
HL_7A0S_042
HL_61337.4
HL_9R3A_0751/a/1728:1731No text annotation
geometric
HL_8CRE_197
HL_94980.1
HL_9R3A_0761/a/1752:1756No text annotation
homologous
HL_7A0S_044
HL_80709.5
HL_9R3A_0771/a/1777:1787No text annotation
geometric
HL_8B0X_073
HL_87681.1
HL_9R3A_0781/a/1806:1811No text annotation
geometric
HL_8B0X_074
HL_37569.3
HL_9R3A_0791/a/1868:1873GNRA
homologous
HL_7A0S_047
HL_34789.4
HL_9R3A_0801/a/1910:1920No text annotation
geometric
HL_9DFE_046
HL_82185.1
HL_9R3A_0811/a/1949:1957No text annotation
homologous
HL_7A0S_048
HL_61418.2
HL_9R3A_0821/a/2027:2036No text annotation
homologous
HL_7A0S_049
HL_78372.1
HL_9R3A_0831/a/2209:2215No text annotation
geometric
HL_8B0X_079
HL_42293.1
HL_9R3A_0841/a/2248:2256No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_9R3A_0851/a/2264:2276No text annotation
homologous
HL_7A0S_053
HL_02042.1
HL_9R3A_0861/a/2304:2312No text annotation
geometric
HL_8B0X_101
HL_02452.1
HL_9R3A_0871/a/2324:2331Pseudoknot geometry
homologous
HL_7A0S_055
HL_52651.2
HL_9R3A_0881/a/2348:2370No text annotation
HL_9R3A_0891/a/2404:2413No text annotation
homologous
HL_7A0S_058
HL_51853.2
HL_9R3A_0901/a/2471:2479No text annotation
homologous
HL_7A0S_059
HL_52011.1
HL_9R3A_0911/a/2527:2536No text annotation
geometric
HL_9E6Q_066
HL_37889.1
HL_9R3A_0921/a/2551:2557No text annotation
homologous
HL_7A0S_061
HL_48677.1
HL_9R3A_0931/a/2594:2599GNRA
homologous
HL_7A0S_062
HL_34789.4
HL_9R3A_0941/a/2658:2663GNRA
homologous
HL_7A0S_063
HL_34789.4
HL_9R3A_0951/a/2701:2706Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.2
HL_9R3A_0961/a/2745:2759No text annotation
homologous
HL_7A0S_065
HL_53269.2
HL_9R3A_0971/a/2795:2801No text annotation
geometric
HL_8P9A_179
HL_65256.1
HL_9R3A_0981/a/2819:2827No text annotation
homologous
HL_7A0S_067
HL_37889.1
HL_9R3A_0991/a/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.4
HL_9R3A_1001/b/34:48No text annotation
geometric
HL_8B0X_102
HL_97756.3
HL_9R3A_1011/b/38:44No text annotation
homologous
HL_4V9F_071
HL_59381.2
HL_9R3A_1021/b/86:90No text annotation
geometric
HL_8B0X_098
HL_90436.3

Problematic loops

#loop idProblemSequence
HL_9R3A_021UNCG
HL_9R3A_070UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9R3A_0011/A/30:32,
1/A/526:527
Single bulged G
homologous
IL_6CZR_113
NA
IL_9R3A_0021/A/44:45,
1/A/370:372
Single bulged A
homologous
IL_6CZR_114
NA
IL_9R3A_0031/A/47:52,
1/A/333:335
No text annotation
geometric
IL_8B0X_003
IL_32983.2
IL_9R3A_0041/A/54:56,
1/A/330:331
Minor groove platform
homologous
IL_6CZR_116
NA
IL_9R3A_0051/A/63:69,
1/A/83:88
No text annotation
IL_9R3A_0061/A/70:73,
1/A/81:82
No text annotation
geometric
IL_8B0X_007
IL_87975.1
IL_9R3A_0071/A/112:115,
1/A/205:207
No text annotation
geometric
IL_8B0X_009
IL_76400.1
IL_9R3A_0081/A/116:120,
1/A/201:204
Minor groove platform related
homologous
IL_6CZR_120
NA
IL_9R3A_0091/A/128:130,
1/A/160:162
No text annotation
geometric
IL_8B0X_011
IL_10892.2
IL_9R3A_0101/A/131:137,
1/A/152:159
tWH-tWH-tHW-tHW
homologous
IL_6CZR_121
NA
IL_9R3A_0111/A/216:221,
1/A/251:258
Kink-turn with non-sequential stacking
homologous
IL_6CZR_123
NA
IL_9R3A_0121/A/223:226,
1/A/248:249
No text annotation
homologous
IL_6CZR_405
NA
IL_9R3A_0131/A/266:267,
1/A/278:282
C-loop
homologous
IL_6CZR_125
NA
IL_9R3A_0151/A/341:343,
1/A/366:367
Single bulged U
homologous
IL_6CZR_126
NA
IL_9R3A_0161/A/345:349,
1/A/363:364
C-loop
homologous
IL_6CZR_127
NA
IL_9R3A_0171/A/349:350,
1/A/361:363
Single bulged G
homologous
IL_6CZR_358
NA
IL_9R3A_0181/A/383:391,
1/A/400:407
No text annotation
IL_9R3A_0191/A/414:416,
1/A/466:471
No text annotation
geometric
IL_8B0X_020
IL_02111.1
IL_9R3A_0201/A/420:431,
1/A/449:462
No text annotation
IL_9R3A_0211/A/478:485,
1/A/514:515
SSU/LSU pseudoknot
homologous
IL_6CZR_132
NA
IL_9R3A_0221/A/489:495,
1/A/502:510
Kink-turn related
homologous
IL_6CZR_133
NA
IL_9R3A_0231/A/543:549,
1/A/854:855
No text annotation
homologous
IL_6CZR_134
NA
IL_9R3A_0241/A/554:558,
1/A/731:735
tSH-tHW-tHS
homologous
IL_6CZR_135
NA
IL_9R3A_0251/A/568:570,
1/A/618:619
Major groove platform
homologous
IL_6CZR_407
NA
IL_9R3A_0261/A/571:572,
1/A/614:617
Major groove minor groove platform; mini C-loop
homologous
IL_6CZR_137
NA
IL_9R3A_0271/A/579:586,
1/A/602:607
No text annotation
homologous
IL_6CZR_408
NA
IL_9R3A_0281/A/628:629,
1/A/725:728
No text annotation
geometric
IL_8B0X_030
IL_74641.2
IL_9R3A_0291/A/633:634,
1/A/719:721
No text annotation
geometric
IL_8OI5_088
IL_15011.3
IL_9R3A_0301/A/636:640,
1/A/714:717
Tandem non-canonical cWW pairs
homologous
IL_6CZR_141
NA
IL_9R3A_0311/A/647:651,
1/A/687:691
Triple non-canonical cWW pairs
homologous
IL_6CZR_409
NA
IL_9R3A_0321/A/658:662,
1/A/673:680
No text annotation
geometric
IL_8B0X_034
IL_71972.1
IL_9R3A_0331/A/748:752,
1/A/778:779
Left turn
homologous
IL_6CZR_144
NA
IL_9R3A_0341/A/753:757,
1/A/773:777
tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_9R3A_0351/A/807:808,
1/A/825:827
No text annotation
IL_9R3A_0361/A/808:813,
1/A/821:825
No text annotation
IL_9R3A_0371/A/861:868,
1/A/879:884
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_6CZR_364
NA
IL_9R3A_0381/A/896:897,
1/A/1367:1369
Single bulged A
homologous
IL_6CZR_147
NA
IL_9R3A_0391/A/899:901,
1/A/1364:1365
Single bulged G
homologous
IL_6CZR_148
NA
IL_9R3A_0401/A/907:909,
1/A/1354:1358
No text annotation
homologous
IL_6CZR_410
NA
IL_9R3A_0411/A/927:928,
1/A/1200:1202
No text annotation
homologous
IL_6CZR_150
NA
IL_9R3A_0421/A/967:971,
1/A/1018:1019
Minor groove platform
geometric
IL_4LFB_039
IL_61370.1
IL_9R3A_0431/A/972:973,
1/A/1015:1017
No text annotation
geometric
IL_8OI5_088
IL_15011.3
IL_9R3A_0441/A/1022:1024,
1/A/1182:1183
No text annotation
homologous
IL_6CZR_152
NA
IL_9R3A_0451/A/1026:1030,
1/A/1178:1180
No text annotation
homologous
IL_6CZR_154
NA
IL_9R3A_0461/A/1031:1032,
1/A/1173:1177
Minor groove platform
homologous
IL_6CZR_155
NA
IL_9R3A_0471/A/1034:1035,
1/A/1169:1171
Single bulged U
homologous
IL_6CZR_156
NA
IL_9R3A_0481/A/1035:1037,
1/A/1167:1169
Isolated non-canonical cWW pair
homologous
IL_6CZR_157
NA
IL_9R3A_0491/A/1098:1102,
1/A/1118:1123
No text annotation
geometric
IL_8B0X_050
IL_38603.1
IL_9R3A_0501/A/1103:1106,
1/A/1116:1117
Minor groove platform
geometric
IL_3MXH_005
IL_87975.1
IL_9R3A_0511/A/1132:1135,
1/A/1149:1155
No text annotation
geometric
IL_4LFB_050
IL_32376.1
IL_9R3A_0521/A/1221:1227,
1/A/1258:1264
No text annotation
homologous
IL_6CZR_160
NA
IL_9R3A_0531/A/1227:1232,
1/A/1251:1258
No text annotation
IL_9R3A_0541/A/1233:1238,
1/A/1245:1250
No text annotation
IL_9R3A_0551/A/1277:1282,
1/A/1303:1308
No text annotation
IL_9R3A_0561/A/1373:1375,
1/A/1475:1478
No text annotation
homologous
IL_6CZR_165
NA
IL_9R3A_0571/A/1375:1378,
1/A/1471:1475
No text annotation
homologous
IL_6CZR_368
NA
IL_9R3A_0581/A/1379:1381,
1/A/1468:1470
Isolated non-canonical cWW pair
geometric
IL_8CRE_468
IL_01003.4
IL_9R3A_0591/A/1381:1383,
1/A/1465:1468
No text annotation
geometric
IL_4LFB_070
IL_29925.2
IL_9R3A_0601/A/1386:1388,
1/A/1460:1462
Isolated non-canonical cWW pair
homologous
IL_6CZR_411
NA
IL_9R3A_0611/A/1390:1393,
1/A/1455:1458
Double sheared
homologous
IL_6CZR_169
NA
IL_9R3A_0621/A/1404:1409,
1/A/1440:1444
No text annotation
geometric
IL_8B0X_062
IL_67427.1
IL_9R3A_0631/A/1413:1416,
1/A/1434:1436
No text annotation
IL_9R3A_0641/A/1419:1423,
1/A/1428:1431
No text annotation
IL_9R3A_0651/a/2:4,
1/a/2900:2902
No text annotation
geometric
IL_9AXU_044
IL_01003.4
IL_9R3A_0661/a/4:6,
1/a/2897:2900
No text annotation
IL_9R3A_0671/a/24:30,
1/a/510:516
Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_22311.1
IL_9R3A_0681/a/36:37,
1/a/442:444
Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_9R3A_0691/a/43:44,
1/a/434:436
Minor groove platform
homologous
IL_7A0S_003
IL_34520.3
IL_9R3A_0701/a/81:85,
1/a/97:105
Kink-turn
homologous
IL_7A0S_004
IL_94910.1
IL_9R3A_0711/a/183:184,
1/a/212:214
Single stack bend
homologous
IL_7A0S_005
IL_15011.3
IL_9R3A_0721/a/188:194,
1/a/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_62167.3
IL_9R3A_0731/a/239:245,
1/a/253:258
No text annotation
geometric
IL_8B0X_071
IL_02666.1
IL_9R3A_0741/a/269:271,
1/a/366:370
No text annotation
IL_9R3A_0751/a/274:281,
1/a/359:363
No text annotation
geometric
IL_8B0X_073
IL_22028.1
IL_9R3A_0761/a/293:295,
1/a/343:347
No text annotation
geometric
IL_8B0X_074
IL_76658.1
IL_9R3A_0771/a/481:484,
1/a/496:509
No text annotation
geometric
IL_8B0X_075
IL_44923.1
IL_9R3A_0781/a/536:539,
1/a/554:557
No text annotation
geometric
IL_8B0X_076
IL_58355.2
IL_9R3A_0791/a/564:566,
1/a/575:577
Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_71625.3
IL_9R3A_0801/a/606:610,
1/a/618:622
AAA cross-strand stack
homologous
IL_7A0S_013
IL_66798.3
IL_9R3A_0811/a/672:674,
1/a/806:808
Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_01003.4
IL_9R3A_0821/a/674:678,
1/a/799:806
tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_73855.1
IL_9R3A_0831/a/697:698,
1/a/763:765
Single bulged A
homologous
IL_7A0S_016
IL_14190.2
IL_9R3A_0841/a/702:703,
1/a/728:730
Single bulged G
homologous
IL_7A0S_017
IL_28408.2
IL_9R3A_0851/a/703:708,
1/a/723:728
No text annotation
IL_9R3A_0861/a/738:740,
1/a/757:758
No text annotation
geometric
IL_8B0X_084
IL_48076.8
IL_9R3A_0871/a/775:777,
1/a/787:791
No text annotation
geometric
IL_8B0X_085
IL_89509.1
IL_9R3A_0881/a/844:847,
1/a/933:934
No text annotation
geometric
IL_8B0X_087
IL_79144.1
IL_9R3A_0891/a/844:848,
1/a/930:934
No text annotation
geometric
IL_8B0X_179
IL_01742.1
IL_9R3A_0901/a/847:848,
1/a/930:933
No text annotation
geometric
IL_8B0X_088
IL_36175.2
IL_9R3A_0911/a/850:851,
1/a/926:928
No text annotation
geometric
IL_8B0X_089
IL_15011.3
IL_9R3A_0921/a/856:862,
1/a/915:921
No text annotation
geometric
IL_8B0X_090
IL_94128.1
IL_9R3A_0931/a/862:863,
1/a/913:915
Minor groove platform
homologous
IL_7A0S_028
IL_34520.3
IL_9R3A_0941/a/864:868,
1/a/909:912
C-loop
homologous
IL_7A0S_029
IL_16301.1
IL_9R3A_0951/a/870:872,
1/a/905:907
Isolated near basepair
homologous
IL_7A0S_030
IL_42997.5
IL_9R3A_0961/a/875:879,
1/a/898:902
Double sheared with non-canonical cWW
geometric
IL_4V9F_085
IL_87767.2
IL_9R3A_0971/a/880:882,
1/a/894:897
No text annotation
geometric
IL_8GLP_187
IL_76400.1
IL_9R3A_0981/a/994:996,
1/a/1159:1160
Single bulged C
homologous
IL_7A0S_032
IL_05642.3
IL_9R3A_0991/a/998:1002,
1/a/1153:1157
UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_9R3A_1001/a/1004:1011,
1/a/1150:1151
SSU/LSU pseudoknot
homologous
IL_7A0S_034
IL_11411.1
IL_9R3A_1011/a/1011:1013,
1/a/1149:1150
Single bulged U
homologous
IL_7A0S_035
IL_97561.5
IL_9R3A_1021/a/1018:1024,
1/a/1140:1144
Kink-turn related
homologous
IL_7A0S_036
IL_57188.6
IL_9R3A_1031/a/1024:1030,
1/a/1124:1140
No text annotation
geometric
IL_8B0X_101
IL_50715.4
IL_9R3A_1041/a/1031:1034,
1/a/1121:1123
No text annotation
IL_9R3A_1051/a/1038:1041,
1/a/1114:1117
No text annotation
geometric
IL_8B0X_103
IL_15225.2
IL_9R3A_1061/a/1043:1051,
1/a/1108:1112
No text annotation
IL_9R3A_1071/a/1196:1198,
1/a/1247:1250
Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.5
IL_9R3A_1081/a/1202:1206,
1/a/1240:1243
No text annotation
IL_9R3A_1091/a/1208:1215,
1/a/1234:1238
Kink-turn
homologous
IL_7A0S_043
IL_90775.2
IL_9R3A_1101/a/1262:1269,
1/a/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_045
IL_62167.3
IL_9R3A_1111/a/1310:1313,
1/a/1603:1604
No text annotation
geometric
IL_8B0X_109
IL_74641.2
IL_9R3A_1121/a/1319:1323,
1/a/1331:1333
C-loop
homologous
IL_7A0S_047
IL_06671.1
IL_9R3A_1131/a/1351:1355,
1/a/1376:1380
UAA/GAN
homologous
IL_7A0S_048
IL_89021.4
IL_9R3A_1141/a/1357:1361,
1/a/1370:1374
tSH-tHW-tHS
homologous
IL_7A0S_049
IL_05821.1
IL_9R3A_1151/a/1415:1416,
1/a/1582:1587
No text annotation
IL_9R3A_1161/a/1417:1421,
1/a/1577:1581
UAA/GAN
homologous
IL_7A0S_051
IL_08938.1
IL_9R3A_1171/a/1432:1435,
1/a/1557:1561
No text annotation
geometric
IL_8B0X_115
IL_28284.1
IL_9R3A_1181/a/1437:1440,
1/a/1551:1555
tSH-tHW
homologous
IL_7A0S_053
IL_74317.1
IL_9R3A_1191/a/1450:1451,
1/a/1459:1461
No text annotation
geometric
IL_8B0X_117
IL_97561.5
IL_9R3A_1201/a/1468:1471,
1/a/1520:1524
No text annotation
geometric
IL_8B0X_118
IL_68574.5
IL_9R3A_1211/a/1474:1478,
1/a/1513:1517
Double sheared with near cWW
homologous
IL_7A0S_056
IL_87767.2
IL_9R3A_1221/a/1481:1482,
1/a/1507:1510
No text annotation
geometric
IL_8B0X_120
IL_52564.1
IL_9R3A_1231/a/1489:1491,
1/a/1499:1500
No text annotation
geometric
IL_8B0X_121
IL_14190.2
IL_9R3A_1241/a/1526:1529,
1/a/1542:1546
No text annotation
geometric
IL_8B0X_122
IL_45790.2
IL_9R3A_1251/a/1651:1656,
1/a/2004:2006
No text annotation
homologous
IL_7A0S_059
IL_12566.5
IL_9R3A_1261/a/1663:1665,
1/a/1995:1997
Isolated tWW turn
homologous
IL_7A0S_060
IL_10432.1
IL_9R3A_1271/a/1666:1669,
1/a/1993:1994
No text annotation
geometric
IL_8B0X_125
IL_74641.2
IL_9R3A_1281/a/1666:1674,
1/a/1990:1994
No text annotation
geometric
IL_8B0X_180
IL_80252.1
IL_9R3A_1291/a/1669:1674,
1/a/1990:1993
Intercalated tWH
homologous
IL_7A0S_062
IL_28217.1
IL_9R3A_1301/a/1686:1691,
1/a/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7A0S_063
IL_20700.1
IL_9R3A_1311/a/1712:1718,
1/a/1742:1746
No text annotation
geometric
IL_8B0X_128
IL_82100.1
IL_9R3A_1321/a/1720:1724,
1/a/1736:1740
No text annotation
geometric
IL_8B0X_129
IL_70744.1
IL_9R3A_1331/a/1727:1728,
1/a/1731:1733
No text annotation
geometric
IL_8B0X_130
IL_05642.3
IL_9R3A_1341/a/1770:1771,
1/a/1980:1982
Single bulged A
homologous
IL_7A0S_064
IL_14190.2
IL_9R3A_1351/a/1798:1804,
1/a/1813:1821
Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_9R3A_1361/a/1837:1840,
1/a/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_55206.1
IL_9R3A_1371/a/1841:1842,
1/a/1898:1901
Major groove intercalation
homologous
IL_7A0S_067
IL_77710.1
IL_9R3A_1381/a/1846:1849,
1/a/1893:1894
Major groove minor groove platform; mini C-loop
homologous
IL_7A0S_068
IL_73108.2
IL_9R3A_1391/a/1851:1860,
1/a/1882:1891
No text annotation
IL_9R3A_1401/a/1864:1867,
1/a/1874:1878
No text annotation
geometric
IL_8B0X_136
IL_77691.7
IL_9R3A_1411/a/1933:1934,
1/a/1964:1967
No text annotation
geometric
IL_8B0X_137
IL_24886.2
IL_9R3A_1421/a/1934:1945,
1/a/1961:1964
No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_9R3A_1431/a/2050:2052,
1/a/2617:2618
Major groove platform
homologous
IL_7A0S_073
IL_48076.8
IL_9R3A_1441/a/2054:2056,
1/a/2612:2615
No text annotation
geometric
IL_8B0X_140
IL_80025.1
IL_9R3A_1451/a/2067:2069,
1/a/2442:2443
Single bulged U
homologous
IL_7A0S_075
IL_97561.5
IL_9R3A_1461/a/2070:2071,
1/a/2438:2441
Minor groove platform
homologous
IL_7A0S_076
IL_34520.3
IL_9R3A_1471/a/2081:2083,
1/a/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7A0S_077
IL_87316.2
IL_9R3A_1481/a/2085:2087,
1/a/2232:2234
Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_71625.3
IL_9R3A_1491/a/2202:2204,
1/a/2220:2221
No text annotation
geometric
IL_8B0X_146
IL_97561.5
IL_9R3A_1501/a/2297:2299,
1/a/2317:2321
No text annotation
geometric
IL_8B0X_147
IL_14250.1
IL_9R3A_1511/a/2401:2403,
1/a/2414:2415
No text annotation
geometric
IL_9AXU_122
IL_97561.5
IL_9R3A_1521/a/2453:2454,
1/a/2498:2500
Single stack bend
homologous
IL_7A0S_083
IL_15011.3
IL_9R3A_1531/a/2454:2455,
1/a/2496:2498
Major groove platform
homologous
IL_7A0S_084
IL_48076.8
IL_9R3A_1541/a/2457:2459,
1/a/2493:2494
Major groove platform
homologous
IL_7A0S_085
IL_48076.8
IL_9R3A_1551/a/2459:2461,
1/a/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_7A0S_086
IL_36931.2
IL_9R3A_1561/a/2466:2470,
1/a/2480:2484
Double sheared with non-canonical cWW
homologous
IL_7A0S_087
IL_87767.2
IL_9R3A_1571/a/2507:2508,
1/a/2580:2582
Major groove platform
homologous
IL_7A0S_088
IL_46637.2
IL_9R3A_1581/a/2510:2512,
1/a/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_68118.4
IL_9R3A_1591/a/2512:2513,
1/a/2571:2574
Multiple bulged bases
homologous
IL_7A0S_090
IL_44609.2
IL_9R3A_1601/a/2522:2523,
1/a/2540:2543
Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.2
IL_9R3A_1611/a/2591:2592,
1/a/2601:2603
No text annotation
geometric
IL_8B0X_159
IL_14190.2
IL_9R3A_1621/a/2636:2640,
1/a/2774:2782
tSH-tHS-tHW
homologous
IL_7A0S_093
IL_04638.4
IL_9R3A_1631/a/2652:2658,
1/a/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.6
IL_9R3A_1641/a/2680:2684,
1/a/2725:2727
C-loop
homologous
IL_7A0S_095
IL_63596.12
IL_9R3A_1651/a/2687:2691,
1/a/2718:2722
UAA/GAN related, with intercalation
homologous
IL_7A0S_096
IL_82016.1
IL_9R3A_1661/a/2695:2696,
1/a/2711:2714
Multiple bulged bases
homologous
IL_7A0S_097
IL_44609.2
IL_9R3A_1671/a/2737:2742,
1/a/2762:2767
UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_91079.1
IL_9R3A_1681/a/2806:2811,
1/a/2889:2892
No text annotation
IL_9R3A_1691/a/2838:2839,
1/a/2878:2880
Major groove intercalation
homologous
IL_7A0S_099
IL_28408.2
IL_9R3A_1701/a/2843:2846,
1/a/2870:2874
No text annotation
geometric
IL_8B0X_169
IL_60988.2
IL_9R3A_1711/a/2847:2852,
1/a/2865:2869
No text annotation
homologous
IL_7A0S_101
IL_48489.1
IL_9R3A_1721/b/17:18,
1/b/65:67
Major groove intercalation
homologous
IL_4V9F_101
IL_14190.2
IL_9R3A_1731/b/23:28,
1/b/56:60
No text annotation
geometric
IL_8B0X_172
IL_18472.5
IL_9R3A_1741/b/30:31,
1/b/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.2
IL_9R3A_1751/b/34:38,
1/b/44:48
Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.12
IL_9R3A_1761/b/71:79,
1/b/97:105
Bacterial 5S Loop E
homologous
IL_7A0S_106
IL_71138.1

Problematic loops

#loop idProblemSequence
IL_9R3A_014Isolated cWH basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9R3A_0011/A/46:47,
1/A/335:341,
1/A/367:369
No text annotation
geometric
J3_8B0X_001
J3_58657.1
J3_9R3A_0021/A/46:52,
1/A/333:341,
1/A/367:369
No text annotation
homologous
J3_6CZR_058
NA
J3_9R3A_0031/A/560:562,
1/A/625:628,
1/A/728:729
No text annotation
geometric
J3_4LFB_011
J3_01633.1
J3_9R3A_0041/A/560:562,
1/A/625:629,
1/A/725:729
No text annotation
homologous
J3_6CZR_077
NA
J3_9R3A_0051/A/646:647,
1/A/691:699,
1/A/706:708
No text annotation
homologous
J3_6CZR_017
NA
J3_9R3A_0061/A/800:803,
1/A/831:835,
1/A/842:848
No text annotation
homologous
J3_6CZR_018
NA
J3_9R3A_0071/A/910:913,
1/A/1318:1324,
1/A/1346:1353
No text annotation
homologous
J3_6CZR_061
NA
J3_9R3A_0081/A/917:920,
1/A/1209:1211,
1/A/1311:1314
No text annotation
homologous
J3_6CZR_019
NA
J3_9R3A_0091/A/929:936,
1/A/947:958,
1/A/1195:1199
No text annotation
geometric
J3_8B0X_007
J3_88451.1
J3_9R3A_0101/A/964:967,
1/A/1019:1021,
1/A/1184:1189
No text annotation
geometric
J3_8B0X_008
J3_84394.1
J3_9R3A_0111/A/964:971,
1/A/1018:1021,
1/A/1184:1189
No text annotation
homologous
J3_6CZR_063
NA
J3_9R3A_0121/A/977:981,
1/A/996:1001,
1/A/1008:1011
No text annotation
J3_9R3A_0131/A/1037:1042,
1/A/1081:1087,
1/A/1161:1167
No text annotation
homologous
J3_6CZR_023
NA
J3_9R3A_0141/A/1047:1048,
1/A/1057:1060,
1/A/1073:1076
No text annotation
homologous
J3_6CZR_079
NA
J3_9R3A_0151/A/1089:1093,
1/A/1128:1132,
1/A/1155:1159
No text annotation
J3_9R3A_0161/A/1089:1093,
1/A/1128:1135,
1/A/1149:1159
No text annotation
J3_9R3A_0171/A/1211:1215,
1/A/1270:1277,
1/A/1308:1311
No text annotation
homologous
J3_6CZR_026
NA
J3_9R3A_0181/a/30:31,
1/a/474:481,
1/a/509:510
No text annotation
geometric
J3_8B0X_014
J3_68715.1
J3_9R3A_0191/a/30:31,
1/a/474:484,
1/a/496:510
No text annotation
homologous
J3_7A0S_015
J3_17917.1
J3_9R3A_0201/a/32:35,
1/a/445:461,
1/a/468:473
No text annotation
homologous
J3_7A0S_016
J3_07616.1
J3_9R3A_0211/a/56:57,
1/a/70:76,
1/a/110:114
No text annotation
homologous
J3_7A0S_002
J3_01004.1
J3_9R3A_0221/a/297:301,
1/a/316:325,
1/a/337:341
No text annotation
geometric
J3_8B0X_034
J3_77124.1
J3_9R3A_0231/a/683:689,
1/a/773:775,
1/a/791:794
No text annotation
homologous
J3_7A0S_004
J3_46658.1
J3_9R3A_0241/a/698:700,
1/a/732:736,
1/a/760:763
No text annotation
homologous
J3_7A0S_005
J3_69816.1
J3_9R3A_0251/a/1298:1303,
1/a/1625:1627,
1/a/1639:1642
No text annotation
homologous
J3_7A0S_006
J3_32852.7
J3_9R3A_0261/a/1306:1309,
1/a/1605:1611,
1/a/1620:1622
No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_9R3A_0271/a/1344:1349,
1/a/1382:1385,
1/a/1402:1403
No text annotation
J3_9R3A_0281/a/1424:1429,
1/a/1564:1565,
1/a/1568:1574
No text annotation
homologous
J3_7A0S_019
J3_34864.3
J3_9R3A_0291/a/2091:2093,
1/a/2196:2200,
1/a/2223:2228
No text annotation
homologous
J3_7A0S_009
J3_17460.1
J3_9R3A_0301/a/2285:2289,
1/a/2343:2347,
1/a/2371:2383
No text annotation
J3_9R3A_0311/a/2295:2297,
1/a/2321:2323,
1/a/2332:2337
No text annotation
geometric
J3_8B0X_022
J3_05327.1
J3_9R3A_0321/a/2295:2299,
1/a/2317:2323,
1/a/2332:2337
No text annotation
J3_9R3A_0331/a/2517:2520,
1/a/2545:2547,
1/a/2561:2567
No text annotation
homologous
J3_7A0S_011
J3_32601.6
J3_9R3A_0341/a/2789:2791,
1/a/2805:2806,
1/a/2892:2894
No text annotation
J3_9R3A_0351/a/2812:2815,
1/a/2831:2836,
1/a/2882:2888
No text annotation
J3_9R3A_0361/b/10:16,
1/b/68:70,
1/b/106:110
No text annotation
J4_9R3A_0011/A/99:106,
1/A/213:214,
1/A/260:263,
1/A/285:286
No text annotation
homologous
J4_6CZR_027
NA
J4_9R3A_0021/A/126:128,
1/A/162:168,
1/A/177:183,
1/A/193:195
No text annotation
J4_9R3A_0031/A/549:551,
1/A/738:743,
1/A/784:795,
1/A/853:854
No text annotation
homologous
J4_6CZR_013
NA
J4_9R3A_0041/Y/7:10,
1/Y/26:28,
1/Y/44:50,
1/Y/66:67
tRNA junction
homologous
J4_7MRL_001
J4_95067.1
J4_9R3A_0051/Z/7:10,
1/Z/25:27,
1/Z/43:49,
1/Z/65:66
tRNA junction
homologous
J4_1H4S_001
J4_95067.1
J4_9R3A_0061/a/268:269,
1/a/370:375,
1/a/399:406,
1/a/421:424
No text annotation
homologous
J4_7A0S_001
J4_94698.1
J4_9R3A_0071/a/297:301,
1/a/316:319,
1/a/323:325,
1/a/337:341
No text annotation
homologous
J4_7A0S_002
J4_16174.1
J4_9R3A_0081/a/601:604,
1/a/624:628,
1/a/635:638,
1/a/650:656
No text annotation
J4_9R3A_0091/a/1270:1276,
1/a/1294:1295,
1/a/1645:1648,
1/a/2009:2010
No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_9R3A_0101/a/1310:1314,
1/a/1338:1343,
1/a/1404:1405,
1/a/1597:1604
No text annotation
J4_9R3A_0111/a/1313:1314,
1/a/1338:1343,
1/a/1404:1405,
1/a/1597:1603
No text annotation
homologous
J4_7A0S_006
J4_48150.1
J4_9R3A_0121/a/1444:1445,
1/a/1466:1467,
1/a/1525:1526,
1/a/1546:1547
No text annotation
J4_9R3A_0131/a/1772:1776,
1/a/1788:1792,
1/a/1827:1830,
1/a/1975:1979
No text annotation
homologous
J4_7A0S_008
J4_61477.6
J4_9R3A_0141/a/1833:1835,
1/a/1905:1906,
1/a/1924:1933,
1/a/1967:1972
No text annotation
J4_9R3A_0151/a/2643:2646,
1/a/2674:2676,
1/a/2731:2735,
1/a/2769:2771
No text annotation
J5_9R3A_0011/A/36:39,
1/A/377:380,
1/A/410:414,
1/A/471:474,
1/A/519:522
No text annotation
J5_9R3A_0021/A/36:39,
1/A/377:380,
1/A/410:416,
1/A/466:474,
1/A/519:522
No text annotation
J5_9R3A_0031/A/58:61,
1/A/90:97,
1/A/288:290,
1/A/311:313,
1/A/324:328
No text annotation
homologous
J5_6CZR_021
NA
J5_9R3A_0041/a/47:54,
1/a/116:121,
1/a/130:131,
1/a/148:150,
1/a/176:178
No text annotation
J5_9R3A_0051/a/531:533,
1/a/560:564,
1/a/577:579,
1/a/1261:1262,
1/a/2017:2018
No text annotation
homologous
J5_7A0S_003
J5_43153.6
J5_9R3A_0061/a/584:589,
1/a/668:671,
1/a/809:812,
1/a/1195:1196,
1/a/1250:1256
No text annotation
homologous
J5_7A0S_004
J5_74302.6
J5_9R3A_0071/a/1674:1682,
1/a/1706:1707,
1/a/1751:1752,
1/a/1756:1764,
1/a/1988:1990
No text annotation
homologous
J5_7A0S_005
J5_99177.1
J5_9R3A_0081/a/2057:2064,
1/a/2446:2453,
1/a/2500:2507,
1/a/2582:2588,
1/a/2606:2611
No text annotation
J6_9R3A_0011/a/45:46,
1/a/179:183,
1/a/214:224,
1/a/231:235,
1/a/262:266,
1/a/426:433
No text annotation
J6_9R3A_0021/a/2074:2077,
1/a/2243:2246,
1/a/2258:2259,
1/a/2281:2284,
1/a/2384:2395,
1/a/2421:2435
No text annotation
J7_9R3A_0011/a/8:15,
1/a/525:531,
1/a/2018:2023,
1/a/2040:2043,
1/a/2625:2630,
1/a/2788:2789,
1/a/2894:2895
No text annotation
J7_9R3A_0021/a/817:822,
1/a/835:838,
1/a/940:946,
1/a/971:976,
1/a/987:991,
1/a/1163:1164,
1/a/1185:1190
No text annotation

Problematic loops

No problematic loops


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