IL_9R3A_073

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R3A_073 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.084

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9R3A|1|a|C|239
9R3A|1|a|C|240
9R3A|1|a|A|241
9R3A|1|a|G|242
9R3A|1|a|U|243
9R3A|1|a|A|244
9R3A|1|a|G|245
*
9R3A|1|a|C|253
9R3A|1|a|G|254
9R3A|1|a|A|255
9R3A|1|a|A|256
9R3A|1|a|C|257
9R3A|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain k

Large ribosomal subunit protein uL15