IL_9R3A_152

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AG*(OMC)CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R3A_152 not in the Motif Atlas

Homologous match to IL_7A0S_083

Geometric discrepancy: 0.2345

The information below is about IL_7A0S_083

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

9R3A|1|a|A|2453
9R3A|1|a|G|2454
*
9R3A|1|a|OMC|2498
9R3A|1|a|C|2499
9R3A|1|a|U|2500

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

Beta-Galactosidase Nascent Chain

Chain Y

Transfer RNA; tRNA

Chain d

50S ribosomal protein L3

Chain v

Large ribosomal subunit protein bL27