IL_9R3A_157

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CG*(PSU)GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R3A_157 not in the Motif Atlas

Homologous match to IL_7A0S_088

Geometric discrepancy: 0.164

The information below is about IL_7A0S_088

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

9R3A|1|a|C|2507
9R3A|1|a|G|2508
*
9R3A|1|a|PSU|2580
9R3A|1|a|G|2581
9R3A|1|a|G|2582

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

Beta-Galactosidase Nascent Chain

Chain Y

Transfer RNA; tRNA

Chain d

50S ribosomal protein L3