IL_9R9O_003

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

9R9O|1|C1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_003 not in the Motif Atlas

Homologous match to IL_9PN5_002

Geometric discrepancy: 0.1026

The information below is about IL_9PN5_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9R9O|1|C1|A|13
9R9O|1|C1|U|14
9R9O|1|C1|C|15
*
9R9O|1|C3|G|144
9R9O|1|C3|U|145

Current chains

Chain C1

25S ribosomal RNA

Chain C3

5.8S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L8-A

Chain LN

60S ribosomal protein L15-A

Chain LX

60S ribosomal protein L25