IL_9R9O_009

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_009 not in the Motif Atlas

Homologous match to IL_9PN5_009

Geometric discrepancy: 0.3727

The information below is about IL_9PN5_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9R9O|1|C1|A|164
9R9O|1|C1|A|165
9R9O|1|C1|C|166
*
9R9O|1|C1|G|256
9R9O|1|C1|U|257

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13-A

Chain Lh

60S ribosomal protein L35-A