IL_9R9O_035
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAUC*GAAG
- Length
- 10 nucleotides
- Bulged bases
- 9R9O|1|C1|U|981, 9R9O|1|C1|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9R9O_035 not in the Motif Atlas
- Homologous match to IL_9PN5_035
- Geometric discrepancy: 0.169
- The information below is about IL_9PN5_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27774.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9R9O|1|C1|C|977
9R9O|1|C1|G|978
9R9O|1|C1|U|979
9R9O|1|C1|A|980
9R9O|1|C1|U|981
9R9O|1|C1|C|982
*
9R9O|1|C1|G|1101
9R9O|1|C1|A|1102
9R9O|1|C1|A|1103
9R9O|1|C1|G|1104
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7-A
- Chain LQ
- 60S ribosomal protein L18-A
- Chain Lb
- 60S ribosomal protein L29
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