IL_9R9O_055

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9R9O|1|C1|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_055 not in the Motif Atlas

Homologous match to IL_9PN5_059

Geometric discrepancy: 0.1032

The information below is about IL_9PN5_059

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9R9O|1|C1|U|1398
9R9O|1|C1|A|1399
9R9O|1|C1|G|1400
*
9R9O|1|C1|C|1411
9R9O|1|C1|G|1412

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LE

60S ribosomal protein L6-B

Chain Le

60S ribosomal protein L32