IL_9R9O_062

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_062 not in the Motif Atlas

Homologous match to IL_9PN5_066

Geometric discrepancy: 0.1051

The information below is about IL_9PN5_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9R9O|1|C1|U|1645
9R9O|1|C1|G|1646
9R9O|1|C1|A|1647
9R9O|1|C1|A|1648
9R9O|1|C1|U|1649
*
9R9O|1|C1|A|1806
9R9O|1|C1|G|1807
9R9O|1|C1|G|1808
9R9O|1|C1|A|1809
9R9O|1|C1|A|1810

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LZ

60S ribosomal protein L27-A

Chain Lg

60S ribosomal protein L34-A