IL_9R9O_081

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAUGUCAAAGU*AACCAAGCGCG

Length

25 nucleotides

Bulged bases

9R9O|1|C1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C1|C|2204
9R9O|1|C1|U|2205
9R9O|1|C1|G|2206
9R9O|1|C1|A|2207
9R9O|1|C1|A|2208
9R9O|1|C1|U|2209
9R9O|1|C1|G|2210
9R9O|1|C1|U|2211
9R9O|1|C1|C|2212
9R9O|1|C1|A|2213
9R9O|1|C1|A|2214
9R9O|1|C1|A|2215
9R9O|1|C1|G|2216
9R9O|1|C1|U|2217
*
9R9O|1|C1|A|2228
9R9O|1|C1|A|2229
9R9O|1|C1|C|2230
9R9O|1|C1|C|2231
9R9O|1|C1|A|2232
9R9O|1|C1|A|2233
9R9O|1|C1|G|2234
9R9O|1|C1|C|2235
9R9O|1|C1|G|2236
9R9O|1|C1|C|2237
9R9O|1|C1|G|2238

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-A

Chain Li

60S ribosomal protein L36-A

Chain SB

40S ribosomal protein S1-A