IL_9R9O_082

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_082 not in the Motif Atlas

Geometric match to IL_9PN5_086

Geometric discrepancy: 0.0952

The information below is about IL_9PN5_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.5

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

14

Unit IDs

9R9O|1|C1|G|2276
9R9O|1|C1|C|2277
*
9R9O|1|C1|G|2307
9R9O|1|C1|C|2308
9R9O|1|C1|A|2309
9R9O|1|C1|U|2310

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain Ln

Large ribosomal subunit protein eL41B