IL_9R9O_089

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_089 not in the Motif Atlas

Geometric match to IL_7VYX_001

Geometric discrepancy: 0.3243

The information below is about IL_7VYX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9R9O|1|C1|A|2441
9R9O|1|C1|G|2442
9R9O|1|C1|A|2443
*
9R9O|1|C1|U|2504
9R9O|1|C1|U|2505
9R9O|1|C1|U|2506

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36-A

Chain SB

40S ribosomal protein S1-A