IL_9R9O_112

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

9R9O|1|C1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_112 not in the Motif Atlas

Homologous match to IL_9H3G_133

Geometric discrepancy: 0.1392

The information below is about IL_9H3G_133

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9R9O|1|C1|A|3103
9R9O|1|C1|U|3104
9R9O|1|C1|U|3105
9R9O|1|C1|A|3106
9R9O|1|C1|U|3107
*
9R9O|1|C1|A|3127
9R9O|1|C1|G|3128
9R9O|1|C1|A|3129
9R9O|1|C1|A|3130
9R9O|1|C1|U|3131

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain LO

60S ribosomal protein L16-A