IL_9R9O_151

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

9R9O|1|C2|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_151 not in the Motif Atlas

Homologous match to IL_9PN5_164

Geometric discrepancy: 0.0878

The information below is about IL_9PN5_164

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9R9O|1|C2|U|439
9R9O|1|C2|U|440
9R9O|1|C2|A|441
*
9R9O|1|C2|U|463
9R9O|1|C2|A|464

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A