IL_9R9O_172

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9R9O|1|C2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_172 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.0935

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9R9O|1|C2|C|874
9R9O|1|C2|G|875
9R9O|1|C2|G|876
9R9O|1|C2|G|877
9R9O|1|C2|G|878
*
9R9O|1|C2|C|950
9R9O|1|C2|A|951
9R9O|1|C2|A|952
9R9O|1|C2|G|953

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SN

40S ribosomal protein S13

Chain Sa

Small ribosomal subunit protein eS26A