IL_9R9O_216

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

9R9O|1|C3|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_216 not in the Motif Atlas

Homologous match to IL_9PN5_140

Geometric discrepancy: 0.091

The information below is about IL_9PN5_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9R9O|1|C3|U|64
9R9O|1|C3|A|65
9R9O|1|C3|A|66
*
9R9O|1|C3|U|93
9R9O|1|C3|C|94
9R9O|1|C3|G|95
9R9O|1|C3|A|96

Current chains

Chain C3

5.8S ribosomal RNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LY

60S ribosomal protein L26-A

Chain Lh

60S ribosomal protein L35-A

Chain Lj

60S ribosomal protein L37-A