IL_9R9P_005
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 9R9P|1|C1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9R9P_005 not in the Motif Atlas
- Homologous match to IL_9PN5_004
- Geometric discrepancy: 0.0635
- The information below is about IL_9PN5_004
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_93502.4
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9R9P|1|C1|C|31
9R9P|1|C1|U|32
9R9P|1|C1|G|33
9R9P|1|C1|A|34
9R9P|1|C1|A|35
9R9P|1|C1|C|36
9R9P|1|C1|U|37
9R9P|1|C1|U|38
*
9R9P|1|C1|A|45
9R9P|1|C1|U|46
9R9P|1|C1|C|47
9R9P|1|C1|A|48
9R9P|1|C1|A|49
9R9P|1|C1|U|50
9R9P|1|C1|A|51
9R9P|1|C1|A|52
9R9P|1|C1|G|53
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain La
- 60S ribosomal protein L28
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Lo
- 60S ribosomal protein L42-A
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