IL_9R9P_026

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_026 not in the Motif Atlas

Homologous match to IL_9PN5_026

Geometric discrepancy: 0.0704

The information below is about IL_9PN5_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9R9P|1|C1|C|803
9R9P|1|C1|C|804
9R9P|1|C1|G|805
*
9R9P|1|C1|C|938
9R9P|1|C1|U|939
9R9P|1|C1|G|940

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L28