IL_9R9P_047
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9R9P_047 not in the Motif Atlas
- Homologous match to IL_9PN5_047
- Geometric discrepancy: 0.0921
- The information below is about IL_9PN5_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46868.2
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
9R9P|1|C1|U|1173
9R9P|1|C1|G|1174
9R9P|1|C1|C|1175
9R9P|1|C1|C|1176
9R9P|1|C1|G|1177
9R9P|1|C1|G|1178
9R9P|1|C1|A|1179
9R9P|1|C1|A|1180
*
9R9P|1|C1|U|1325
9R9P|1|C1|A|1326
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7-A
- Chain LO
- 60S ribosomal protein L16-A
- Chain LS
- 60S ribosomal protein L20-A
- Chain Lf
- 60S ribosomal protein L33-A
Coloring options: