IL_9R9P_084

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9R9P|1|C1|A|2281, 9R9P|1|C1|C|2287, 9R9P|1|C1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|C|2277
9R9P|1|C1|C|2278
9R9P|1|C1|A|2279
9R9P|1|C1|A|2280
9R9P|1|C1|A|2281
9R9P|1|C1|U|2282
9R9P|1|C1|G|2283
9R9P|1|C1|C|2284
9R9P|1|C1|C|2285
9R9P|1|C1|U|2286
9R9P|1|C1|C|2287
9R9P|1|C1|G|2288
*
9R9P|1|C1|C|2304
9R9P|1|C1|G|2305
9R9P|1|C1|C|2306
9R9P|1|C1|G|2307

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

Large ribosomal subunit protein eL41B