IL_9R9P_090

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGAAGC*GGGU

Length

11 nucleotides

Bulged bases

9R9P|1|C1|G|2522, 9R9P|1|C1|G|2585, 9R9P|1|C1|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|A|2520
9R9P|1|C1|U|2521
9R9P|1|C1|G|2522
9R9P|1|C1|A|2523
9R9P|1|C1|A|2524
9R9P|1|C1|G|2525
9R9P|1|C1|C|2526
*
9R9P|1|C1|G|2584
9R9P|1|C1|G|2585
9R9P|1|C1|G|2586
9R9P|1|C1|U|2587

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L2-A

Chain LG

60S ribosomal protein L8-A

Chain LX

60S ribosomal protein L25