IL_9R9P_133

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUAAG*CUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_133 not in the Motif Atlas

Homologous match to IL_9PN5_147

Geometric discrepancy: 0.1543

The information below is about IL_9PN5_147

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61299.9

Basepair signature

cWW-cWH-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9R9P|1|C2|U|58
9R9P|1|C2|C|59
9R9P|1|C2|U|60
9R9P|1|C2|A|61
9R9P|1|C2|A|62
9R9P|1|C2|G|63
*
9R9P|1|C2|C|87
9R9P|1|C2|U|88
9R9P|1|C2|G|89

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SY

40S ribosomal protein S24-A