IL_9R9P_145

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

9R9P|1|C2|U|313, 9R9P|1|C2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_145 not in the Motif Atlas

Homologous match to IL_9PN5_159

Geometric discrepancy: 0.0938

The information below is about IL_9PN5_159

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.7

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

8

Unit IDs

9R9P|1|C2|U|311
9R9P|1|C2|A|312
9R9P|1|C2|U|313
9R9P|1|C2|C|314
9R9P|1|C2|A|315
9R9P|1|C2|A|316
*
9R9P|1|C2|U|348
9R9P|1|C2|U|349
9R9P|1|C2|U|350
9R9P|1|C2|C|351
9R9P|1|C2|A|352
9R9P|1|C2|A|353
9R9P|1|C2|C|354
9R9P|1|C2|G|355

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A

Chain SX

40S ribosomal protein S23-A