IL_9R9P_153

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAC*GUAAU

Length

9 nucleotides

Bulged bases

9R9P|1|C2|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_153 not in the Motif Atlas

Geometric match to IL_4ERD_002

Geometric discrepancy: 0.3159

The information below is about IL_4ERD_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9R9P|1|C2|A|481
9R9P|1|C2|U|482
9R9P|1|C2|A|483
9R9P|1|C2|C|484
*
9R9P|1|C2|G|503
9R9P|1|C2|U|504
9R9P|1|C2|A|505
9R9P|1|C2|A|506
9R9P|1|C2|U|507

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A