IL_9R9P_159

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9R9P|1|C2|A|579, 9R9P|1|C2|U|581, 9R9P|1|C2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|G|562
9R9P|1|C2|U|563
9R9P|1|C2|G|564
9R9P|1|C2|C|565
9R9P|1|C2|C|566
9R9P|1|C2|A|567
9R9P|1|C2|G|568
*
9R9P|1|C2|C|575
9R9P|1|C2|G|576
9R9P|1|C2|G|577
9R9P|1|C2|U|578
9R9P|1|C2|A|579
9R9P|1|C2|A|580
9R9P|1|C2|U|581
9R9P|1|C2|U|582
9R9P|1|C2|C|583

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A