IL_9R9P_172

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_172 not in the Motif Atlas

Homologous match to IL_9PN5_186

Geometric discrepancy: 0.1157

The information below is about IL_9PN5_186

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9R9P|1|C2|G|885
9R9P|1|C2|U|886
9R9P|1|C2|A|887
9R9P|1|C2|U|888
*
9R9P|1|C2|A|924
9R9P|1|C2|G|925
9R9P|1|C2|A|926
9R9P|1|C2|C|927

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A

Chain Sa

Small ribosomal subunit protein eS26A