IL_9R9P_173

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

9R9P|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|U|893
9R9P|1|C2|U|894
9R9P|1|C2|G|895
9R9P|1|C2|U|896
9R9P|1|C2|C|897
9R9P|1|C2|A|898
9R9P|1|C2|G|899
*
9R9P|1|C2|C|910
9R9P|1|C2|U|911
9R9P|1|C2|U|912
9R9P|1|C2|G|913
9R9P|1|C2|G|914
9R9P|1|C2|A|915
9R9P|1|C2|U|916
9R9P|1|C2|U|917
9R9P|1|C2|U|918
9R9P|1|C2|A|919

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A