IL_9R9P_176

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

9R9P|1|C2|C|1096, 9R9P|1|C2|U|1098, 9R9P|1|C2|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|C|1034
9R9P|1|C2|G|1035
9R9P|1|C2|A|1036
*
9R9P|1|C2|U|1095
9R9P|1|C2|C|1096
9R9P|1|C2|U|1097
9R9P|1|C2|U|1098
9R9P|1|C2|U|1099
9R9P|1|C2|G|1100
9R9P|1|C2|G|1101

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SL

40S ribosomal protein S11-A

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A

Chain SX

40S ribosomal protein S23-A